河南农业科学 ›› 2024, Vol. 53 ›› Issue (10): 12-20.DOI: 10.15933/j.cnki.1004-3268.2024.10.002
张玉杨
收稿日期:
2024-04-20
出版日期:
2024-10-15
发布日期:
2024-11-18
作者简介:
张玉杨(1974-),女,河南开封人,副研究员,主要从事动物疾病防治研究。E-mail:zhangyyzhao@126.com
基金资助:
ZHANG Yuyang
Received:
2024-04-20
Published:
2024-10-15
Online:
2024-11-18
摘要: 猪流行性腹泻病毒(Porcine epidemic diarrhea virus,PEDV)引起的猪流行性腹泻(Porcine epidemic diarrhea,PED),是一种急性、高度接触性、高发病率和高致死率的猪肠道传染病,给全球养猪业造成了巨大的经济损失。深入了解PEDV的基因组结构和功能是研制高效安全疫苗的关键。通过解析PEDV的基因组结构、编码的蛋白质以及其与宿主细胞的相互作用,研究人员可以设计出更具针对性的疫苗候选物。诊断技术的进步对于PED的早期诊断及免疫后应答水平监测和评估至关重要。因此,综述了PEDV的基因组结构与功能(包括S、E、M、N、辅助蛋白和非结构蛋白)、血清学以及分子诊断方法[如酶联免疫吸附试验(ELISA)、聚合酶链式反应(PCR)、环介导等温扩增(LAMP)、病毒中和(VN)和间接免疫荧光测定(IFA)、免疫层析试验(ICA)、荧光微球免疫测定(FMIA)、序列测定和聚类规则间隔短回文重复序列(CRISPR)-CRISPR相关蛋白(Cas)]的最新进展,旨在为建立快速有效的PEDV检测方法提供思路,并为临床上有效防控PED提供参考。
中图分类号:
张玉杨. 猪流行性腹泻病毒基因组和诊断方法研究进展[J]. 河南农业科学, 2024, 53(10): 12-20.
ZHANG Yuyang. Research Progress in Genome and Diagnostic Methods of Porcine Epidemic Diarrhea Virus[J]. Journal of Henan Agricultural Sciences, 2024, 53(10): 12-20.
[1]PENSAERT M B,DE BOUCK P. A new coronavirus⁃like particle associated with diarrhea in swine[J]. Archives of Virology,1978,58(3):243⁃247. [2]LIN C M,SAIF L J,MARTHALER D,et al. Evolution,antigenicity and pathogenicity of global porcine epidemic diarrhea virus strains[J]. Virus Research,2016,226:20⁃39. [3]SUN D B,WANG X Y,WEI S,et al. Epidemiology and vaccine of porcine epidemic diarrhea virus in China:A mini⁃review[J]. Journal of Veterinary Medical Science,2016,78(3):355⁃363. [4]HUANG Y W,DICKERMAN A W,PIÑEYRO P,et al.Origin,evolution,and genotyping of emergent porcine epidemic diarrhea virus strains in the United States[J].mBio,2013,4(5):e00737⁃13. [5]HANKE D,POHLMANN A,SAUTER⁃LOUIS C,et al.Porcine epidemic diarrhea in Europe:In⁃detail analyses of disease dynamics and molecular epidemiology[J].Viruses,2017,9(7):177. [6]JUNG K,SAIF L J,WANG Q H. Porcine epidemic diarrhea virus(PEDV) :An update on etiology,transmission,pathogenesis,and prevention and control[J]. Virus Research,2020,286:198045. [7]KOCHERHANS R,BRIDGEN A,ACKERMANN M,et al. Completion of the porcine epidemic diarrhoea coronavirus(PEDV)genome sequence[J]. Virus Genes,2001,23(2):137⁃144. [8]GARCÍA⁃CAMBRÓN J B,CERRITEÑO⁃SÁNCHEZ J L,LARA⁃ROMERO R,et al. Development of glycyrrhizinic acid⁃based lipid nanoparticle(LNP⁃GA)as an adjuvant that improves the immune response to porcine epidemic diarrhea virus spike recombinant protein[J]. Viruses,2024,16(3):431. [9]WALLS A C,TORTORICI M A,BOSCH B J,et al.Cryo⁃electron microscopy structure of a coronavirus spike glycoprotein trimer[J]. Nature,2016,531(7592):114⁃117. [10]HU Y,XIE X H,YANG L C,et al.A comprehensive view on the host factors and viral proteins associated with porcine epidemic diarrhea virus infection[J].Frontiers in Microbiology,2021,12:762358. [11]LI C H,LI W T,LUCIO DE ESESARTE E,et al. Cell attachment domains of the porcine epidemic diarrhea virus spike protein are key targets of neutralizing antibodies[J]. Journal of Virology,2017,91(12):e00273⁃17. [12]CHANG C Y,CHENG I C,CHANG Y C,et al.Identification of neutralizing monoclonal antibodies targeting novel conformational epitopes of the porcine epidemic diarrhoea virus spike protein[J]. Scientific Reports,2019,9(1):2529. [13]CHANG S H,BAE J L,KANG T J,et al. Identification of the epitope region capable of inducing neutralizing antibodies against the porcine epidemic diarrhea virus[J].Molecules and Cells,2002,14(2):295⁃299. [14]OKDA F A,LAWSON S,SINGREY A,et al. The S2 glycoprotein subunit of porcine epidemic diarrhea virus contains immunodominant neutralizing epitopes [J]. Virology,2017,509:185⁃194. [15]CRUZ D J M,KIM C J,SHIN H J. The GPRLQPY motif located at the carboxy⁃terminal of the spike protein induces antibodies that neutralize porcine epidemic diarrhea virus[J]. Virus Research,2008,132 (1/2):192⁃196. [16]SATO T,TAKEYAMA N,KATSUMATA A,et al. Mutations in the spike gene of porcine epidemic diarrhea virus associated with growth adaptation in vitro and attenuation of virulence in vivo[J].Virus Genes,2011,43(1):72⁃78. [17]LI D L,LI Y T,LIU Y C,et al. Isolation and identification of a recombinant porcine epidemic diarrhea virus with a novel insertion in S1 domain[J].Frontiers in Microbiology,2021,12:667084. [18]ZHENG L,YANG Y,HAN Y F,et al. Porcine epidemic diarrhea virus E protein induces formation of stress granules and attenuates protein translation through activation of the PERK/eIF2α signaling pathway[J].Veterinary Microbiology,2024,293:110095. [19]QIU Y W,SUN Y S,ZHENG X Y,et al. Identification of host proteins interacting with the E protein of porcine epidemic diarrhea virus[J]. Frontiers in Microbiology,2024,15:1380578. [20]LEI X M,YANG Y L,HE Y Q,et al. Specific recombinant proteins of porcine epidemic diarrhea virus are immunogenic,revealing their potential use as diagnostic markers[J].Veterinary Microbiology,2019,236:108387. [21]KLUMPERMAN J,LOCKER J K,MEIJER A,et al.Coronavirus M proteins accumulate in the Golgi complex beyond the site of virion budding[J]. Journal of Virology,1994,68(10):6523⁃6534. [22]FAN J H,ZUO Y Z,SHEN X Q,et al. Development of an enzyme⁃linked immunosorbent assay for the monitoring and surveillance of antibodies to porcine epidemic diarrhea virus based on a recombinant membrane protein[J]. Journal of Virological Methods,2015,225:90⁃94. [23]LI C Q,SU M J,YIN B S,et al. Integrin αvβ3 enhances replication of porcine epidemic diarrhea virus on Vero E6 and porcine intestinal epithelial cells[J]. Veterinary Microbiology,2019,237:108400. [24]KRISTEN⁃BURMANN C,ROGGER P,VEIGA I B,et al. Reverse genetic assessment of the roles played by the spike protein and ORF3 in porcine epidemic diarrhea virus pathogenicity[J]. Journal of Virology,2023,97(7):e0196422. [25] YE S Y,LI Z H,CHEN F Z,et al. Porcine epidemic diarrhea virus ORF3 gene prolongs S⁃phase,facilitates formation of vesicles and promotes the proliferation of attenuated PEDV[J].Virus Genes,2015,51(3):385⁃392. [26]OH J S,SONG D S,YANG J S,et al. Comparison of an enzyme⁃linked immunosorbent assay with serum neutralization test for serodiagnosis of porcine epidemic diarrhea virus infection[J].Journal of Veterinary Science,2005,6(4):349⁃352. [27]CHANG C Y,PENG J Y,CHENG Y H,et al.Development and comparison of enzyme⁃linked immunosorbent assays based on recombinant trimeric full⁃length and truncated spike proteins for detecting antibodies against porcine epidemic diarrhea virus[J].BMC Veterinary Research,2019,15(1):421. [28]CHANG C Y,HSU W T,CHAO Y C,et al. Display of porcine epidemic diarrhea virus spike protein on baculovirus to improve immunogenicity and protective efficacy[J]. Viruses,2018,10(7):346. [29]SOZZI E,MORENO A,LELLI D,et al. Development and validation of a monoclonal antibody⁃based competitive ELISA for detection of antibodies against porcine epidemic diarrhoea virus(PEDV)[J].Research in Veterinary Science,2018,121:106⁃110. [30]WANG K,XIE C,ZHANG J N,et al. The identification and characterization of two novel epitopes on the nucleocapsid protein of the porcine epidemic diarrhea virus[J].Scientific Reports,2016,6:39010. [31]GIMENEZ⁃LIROLA L G,ZHANG J Q,CARRILLO⁃AVILA J A,et al. Reactivity of porcine epidemic diarrhea virus structural proteins to antibodies against porcine enteric coronaviruses:Diagnostic implications[J]. Journal of Clinical Microbiology,2017,55(5):1426⁃1436. [32]LIN C M,GAO X,OKA T,et al. Antigenic relationships among porcine epidemic diarrhea virus and transmissible gastroenteritis virus strains[J]. Journal of Virology,2015,89(6):3332⁃3342. [33]SRIJANGWAD A,TRIPIPAT T,SAENG⁃CHUTO K,et al. Development and validation of indirect ELISA for antibody detection against different protein antigens of porcine epidemic diarrhea virus in the colostrum and milk of sows[J].Journal of Immunological Methods,2021,494:113045. [34]GERBER P F,GONG Q L,HUANG Y W,et al. Detection of antibodies against porcine epidemic diarrhea virus in serum and colostrum by indirect ELISA[J].The Veterinary Journal,2014,202(1):33⁃36. [35]KONG N,MENG Q,JIAO Y J,et al. Identification of a novel B⁃cell epitope in the spike protein of porcine epidemic diarrhea virus[J].Virology Journal,2020,17 (1):46. [36]KIMPSTON⁃BURKGREN K,MORA⁃DÍAZ J C,ROBY P,et al.Characterization of the humoral immune response to porcine epidemic diarrhea virus infection under experimental and field conditions using an AlphaLISA platform[J].Pathogens,2020,9(3):233. [37]ZHANG Z B,CHEN J F,SHI H Y,et al.Identification of a conserved linear B⁃cell epitope in the M protein of porcine epidemic diarrhea virus[J].Virology Journal,2012,9:225. [38]GUI R,SHI H Y,LIU W,et al. Development of sandwich Enzyme⁃Linked Immunosorbent Assay for the detection of porcine epidemic diarrhea virus in fecal samples[J]. Microbial Pathogenesis,2018,122:151⁃155. [39]MALBEC R,KIMPSTON⁃BURKGREN K,VANDENKOORNHUYSE E,et al. Agrodiag PorCoV:A multiplex immunoassay for the differential diagnosis of porcine enteric coronaviruses[J]. Journal of Immunological Methods,2020,483:112808. [40]FAN B C,SUN J,ZHU L,et al. Development of a novel double antibody sandwich quantitative enzyme⁃linked immunosorbent assay for detection of porcine epidemic diarrhea virus antigen[J].Frontiers in Veterinary Science,2020,7:540248. [41]THOMAS J T,CHEN Q,GAUGER P C,et al. Effect of porcine epidemic diarrhea virus infectious doses on infection outcomes in Naïve conventional neonatal and weaned pigs[J].PLoS One,2015,10(10):e0139266. [42]WANG Z Y,YIN J Y,CHEN S,et al. Development of an antigen capture enzyme⁃linked immunosorbent assay for virus detection based on porcine epidemic diarrhea virus monoclonal antibodies[J]. Viral Immunology,2015,28(3):184⁃189. [43]BJUSTROM⁃KRAFT J,WOODARD K,GIMÉNEZ⁃LIROLA L,et al. Porcine epidemic diarrhea virus(PEDV)detection and antibody response in commercial growing pigs[J].BMC Veterinary Research,2016,12:99.
[44]HOU W W,FAN M D,ZHU Z B,et al. Establishment and application of a triplex real⁃time RT⁃PCR assay [45]BIGAULT L,BROWN P,BERNARD C,et al.Porcine epidemic diarrhea virus:Viral RNA detection and quantification using a validated one⁃step real time RT⁃PCR[J].Journal of Virological Methods,2020,283:113906. [46]ZHU H C,WANG G,LIU X Z,et al. Establishment and application of a quadruplex real⁃time RT⁃qPCR assay for differentiation of TGEV,PEDV,PDCoV,and PoRVA[J]. Microbial Pathogenesis, 2024, 191:106646.
[47]SI G B,NIU J W,ZHOU X,et al. Use of dual priming oligonucleotide system⁃based multiplex RT⁃PCR assay
[48]JIA S,FENG B H,WANG Z,et al.Dual priming oligonucleotide(DPO)⁃based real⁃time RT⁃PCR assay for [49]TOLEY B J,COVELLI I,BELOUSOV Y,et al.Isothermal strand displacement amplification(iSDA):A rapid and sensitive method of nucleic acid amplification for point⁃of⁃care diagnosis[J].Analyst,2015,140(22):7540⁃7549. [50]PIEPENBURG O,WILLIAMS C H,STEMPLE D L,et al. DNA detection using recombination proteins[J].PLoS Biology,2006,4(7):e204. [51]XU G L,HU L,ZHONG H Y,et al. Cross priming amplification:Mechanism and optimization for isothermal DNA amplification[J].Scientific Reports,2012,2:246. [52]REN X F,LI P C. Development of reverse transcription loop⁃mediated isothermal amplification for rapid detection of porcine epidemic diarrhea virus[J].Virus Genes,2011,42(2):229⁃235. [53]KIM J K,KIM H R,KIM D Y,et al. A simple colorimetric detection of porcine epidemic diarrhea virus by reverse transcription loop⁃mediated isothermal amplification assay using hydroxynaphthol blue metal indicator[J].Journal of Virological Methods,2021,298:114289. [54]LI C H,LIANG J L,YANG D,et al.Visual and rapid detection of porcine epidemic diarrhea virus(PEDV)using reverse transcription loop⁃mediated isothermal amplification method[J].Animals,2022,12(19):2712. [55]KIM H R,KIM J M,BAEK J S,et al.An advanced multiplex real⁃time reverse transcription loop⁃mediated isothermal amplification assay for rapid and reliable detection of porcine epidemic diarrhea virus and porcine internal positive control[J].Viruses,2023,15 (11):2204. [56]GOU H C,DENG J R,WANG J Y,et al. Rapid and sensitive detection of porcine epidemic diarrhea virus y reverse transcription loop⁃mediated isothermal amplification combined with a vertical flow visualization strip[J].Molecular and Cellular Probes,2015,29(1):48⁃53. [57]ZHOU L, CHEN Y H, FANG X E, et al.Microfluidic⁃RT⁃LAMP chip for the point⁃of⁃care detection of emerging and re⁃emerging enteric coronaviruses in swine[J]. Analytica Chimica Acta,2020,1125:57⁃65. [58]PAUDEL S,PARK J E,JANG H,et al. Comparison of serum neutralization and enzyme⁃linked immunosorbent assay on sera from porcine epidemic diarrhea virus vaccinated pigs[J]. The Veterinary Quarterly,2014,34(4):218⁃223. [59] OKDA F,LIU X D,SINGREY A,et al. Development of an indirect ELISA,blocking ELISA,fluorescent microsphere immunoassay and fluorescent focus neutralization assay for serologic evaluation of exposure to North American strains of porcine epidemic diarrhea virus[J].BMC Veterinary Research,2015,11:180. [60]SARMENTO L V,POONSUK K,TIAN L Y,et al.Detection of porcine epidemic diarrhea virus⁃neutralizing antibody using high⁃throughput imaging cytometry[J]. Journal of Veterinary Diagnostic Investigation,2020,32(2):324⁃328. [61] LIN H X,ZHOU H,GAO L,et al. Development and application of an indirect ELISA for the detection of antibodies to porcine epidemic diarrhea virus based on a recombinant spike protein[J]. BMC Veterinary Research,2018,14(1):243. [62]WANG X B,CHEN J F,SHI D,et al. Immunogenicity and antigenic relationships among spike proteins of porcine epidemic diarrhea virus subtypes G1 and G2[J].Archives of Virology,2016,161(3):537⁃547. [63]DIEL D G,LAWSON S,OKDA F,et al. Porcine epidemic diarrhea virus:An overview of current virological and serological diagnostic methods[J].Virus Research,2016,226:60⁃70. [64]LEE C. Porcine epidemic diarrhea virus:An emerging and re⁃emerging epizootic swine virus[J].Virology Journal,2015,12:193. [65]MENG L L, SONG T T, MAO X. Novel immunochromatographic assay on cotton thread based on carbon nanotubes reporter probe[J].Talanta,2017,167:379⁃384. [66]XU F,JIN Z Y,ZOU S Y,et al. EuNPs⁃MAb fluorescent probe based immunochromatographic strip for rapid and sensitive detection of porcine epidemic diarrhea virus[J]. Talanta,2020,214:120865.
[67]KIM Y K,LIM S I,CHO I S,et al. A novel diagnostic approach to detecting porcine epidemic diarrhea virus:
[68]BIAN H F,XU F,JIA Y M,et al. A new immunochromatographic assay for on⁃site detection of porcine epidemic diarrhea virus based on monoclonal antibodies prepared by using cell surface fluorescence immunosorbent assay[J].BMC Veterinary Research,2019,15(1):32. [70]ZOU S Y,WU L,LI G,et al. Development of an accurate lateral flow immunoassay for PEDV detection in swine fecal samples with a filter pad design[J].Animal Diseases,2021,1(1):27. [71]LIU J B,GAO R,SHI H Y,et al. Development of a rapid immunochromatographic strip test for the detection of porcine epidemic diarrhea virus specific SIgA in colostrum[J].Journal of Virological Methods,2020,279:113855. [72]CHRISTOPHER⁃HENNINGS J,ARAUJO K P C,SOUZA C J H,et al. Opportunities for bead⁃based multiplex assays in veterinary diagnostic laboratories[J].Journal of Veterinary Diagnostic Investigation,2013,25(6):671⁃691. [73]CROSSLEY B M,BAI J F,GLASER A,et al.Guidelines for Sanger sequencing and molecular assay monitoring[J].Journal of Veterinary Diagnostic Investigation,2020,32(6):767⁃775. [74]GARCÍA⁃HERNÁNDEZ M E,TRUJILLO⁃ORTEGA M E,ALCARAZ⁃ESTRADA S L,et al. Molecular detection and characterization of porcine epidemic diarrhea virus and porcine aichivirus C coinfection in méxico[J].Viruses,2021,13(5):738. [75]CASSEDY A,PARLE⁃MCDERMOTT A,O’KENNEDY R. Virus detection:A review of the current and emerging molecular and immunological methods[J].Frontiers in Molecular Biosciences,2021,8:637559. [76]YANG K K,LIANG Y Q,LI Y N,et al.Reverse transcription⁃enzymatic recombinase amplification coupled with CRISPR⁃Cas12a for rapid detection and differentiation of PEDV wild⁃type strains and attenuated vaccine strains[J].Analytical and Bioanalytical Chemistry,2021,413(30):7521⁃7529. [77]LIU J J,TAO D G,CHEN X Q,et al.Detection of four porcine enteric coronaviruses using CRISPR⁃Cas12a combined with multiplex reverse transcriptase loop⁃mediated isothermal amplification assay[J].Viruses,2022,14(4):833. |
[1] | 冯培媛, 董悦, 焦紫岚, 陈敏, 孔维儒, 冉杰, 李培富, 田蕾. 粳稻种质苗期耐盐性综合评价与全基因组关联分析[J]. 河南农业科学, 2024, 53(7): 1-9. |
[2] | 林兴雨, 席玉强, 宋南, 尹新明. 黄色小长蝽的线粒体基因组测序和分析[J]. 河南农业科学, 2024, 53(6): 91-99. |
[3] | 张民秀, 谢芝勋, 张艳芳, 谢志勤, 谢丽基, 李孟, 罗思思, 曾婷婷, 王粲. 鸡圆圈病毒3 型可视化LAMP 检测方法的建立及应用[J]. 河南农业科学, 2024, 53(4): 128-136. |
[4] | 马琴, 赵瑞红, 琚铭, 陈成彬, 段迎辉, 杨伟飞, 苗红梅, 张海洋. 基于FISH和GISH技术的芝麻栽培种和野生种染色体组特征比较分析[J]. 河南农业科学, 2024, 53(10): 48-53. |
[5] | 吴民华, 吴子健, 叶晓霞, 谭靖怡, 王燊, 黄琼林. 鸡矢藤叶绿体基因组分析[J]. 河南农业科学, 2024, 53(1): 70-77. |
[6] | 梁雨萱, 庞胜美, 刘梅, 王龙龙, 段强德. 猪流行性腹泻疫苗研究进展[J]. 河南农业科学, 2023, 52(8): 1-10. |
[7] | 杨金初, 童治军, 李萌, 赵旭, 徐永明, 冯颖杰, 杨宗灿, 曲鹏, 李悦, 孙九喆, 张轲. 基于SNP 标记的4 个品种复烤烟叶鉴别研究[J]. 河南农业科学, 2023, 52(11): 174-180. |
[8] | 王会伟, 朱世新, 张新友, 王艳, 杨铁钢, 张向歌, 王树峰, 李春鑫. 油莎豆基因组大小、倍性和系统发育分析[J]. 河南农业科学, 2023, 52(1): 34-41. |
[9] | 宋宇. 稻蟹共生系统根际土壤菌群组成及主要代谢通路分析[J]. 河南农业科学, 2022, 51(3): 73-83. |
[10] | 李春鑫, 赵明忠, 韩留鹏, 高崇, 李正玲, 王艳, 昝香存, 胡琳. 黄淮麦区41 个小麦品种(系)品质相关基因的分子检测[J]. 河南农业科学, 2022, 51(2): 18-27. |
[11] | 桑世飞, 王亚男, 王君怡, 曹梦雨, 孙晓涵, 姬生栋. 9 个抗稻瘟病基因在291 份水稻种质资源中的分布及组合特征[J]. 河南农业科学, 2022, 51(12): 19-27. |
[12] | 陈维聪, 刘运超, 周川杰, 杨苏珍, 魏蔷, 柴书军, 张改平. 猪流行性腹泻病毒S1 蛋白的免疫原性评估[J]. 河南农业科学, 2022, 51(11): 127-134. |
[13] | 宋宇. 稻蟹共作稻田根际土壤微生物群落与水稻产量的关联分析[J]. 河南农业科学, 2022, 51(10): 86-95. |
[14] | 张扬, 孙曙光, 李晴, 魏珍. 莴苣线粒体基因组密码子使用偏好性分析[J]. 河南农业科学, 2022, 51(10): 114-124. |
[15] | 郭振华, 邢广旭, 翁茂洋, 金前跃, 乔松林, 张改平. 2 株伪狂犬病毒变异株全基因组测序及主要保护性抗原氨基酸变异分析[J]. 河南农业科学, 2021, 50(8): 146-153. |
阅读次数 | ||||||
全文 |
|
|||||
摘要 |
|
|||||