SONG Yu . Association Analysis of Rhizosphere Soil Microbial Community and Rice Yield in Rice‑Crab Farming System[J]. Journal of Henan Agricultural Sciences, 2022, 51(10): 86-95.
[1]CHEN C,BAUSKE E M,MUSSON G,et al.Biological control of fusarium wilt on cotton by use of endophytic bacteria[J].Biological Control,1995,5:83‑91.
[2]HOITINK H A J,BOEHM M J.Biocontrol within the context of soil microbial communities a substrate‑dependent phenomenon[J].Annual Review of Phytopathology,1999,37:427‑446.
[3]李俊,沈德龙,姜昕.我国微生物肥料行业的现状与发展对策[J].农产品质量与安全,2003(3):27‑29.
LI J,SHEN D L,JIANG X.Present situation and development countermeasures of microbial fertilizer industry in China[J].Quality and Safety of Agro‑Products,2003(3):27‑29.
[4]郑茗月,李海梅,赵金山,等.微生物肥料的研究现状及发展趋势[J].江西农业学报,2018,30(11):52‑56.
ZHENG M Y,LI H M,ZHAO J S,et al.Current situation and developmental trend of microbial fertilizer researches
[J].Acta Agriculturae Jiangxi,2018,30(11):52‑56.
[5]李晴晴,徐松,赵维,等.根际微生物组介导的解淀粉芽孢杆菌FH-1对水稻的促生机制[J].微生物学报,2019,59(12):2410‑2426.
LI Q Q,XU S,ZHAO W,et al.Rhizosphere microbiome mediated growth‑promoting mechanisms of Bacillusamyloliquefaciens FH‑1 on rice[J].Acta Microbiologica Sinica,2019,59(12):2410‑2426.
[6]赵翔刚,罗衡,刘其根,等.稻田养殖沙塘鳢对稻田水体及底泥微生物群落结构及多样性的影响[J].淡水渔业,2017,17(4):8‑14.
ZHAO X G,LUO H,LIU Q G,et al.Influence of the cultured Odontobutis obscurus to the microbial community structure and diversity in rice‑fish system[J].Freshwater Fisheries,2017,17(4):8‑14.
[7]罗璇,安晨,路璐,等.不同鸭品种在“稻鸭共作”系统中的行为差异及对水稻产量的影响[J].中国农学通报,2019,35(15):159‑164.
LUO X,AN C,LU L,et al.Behavioral differences of duck breeds in the integrated rice‑duck farming system and the effects on rice yield[J].Chinese Agricultural Science Bulletin,2019,35(15):159‑164.
[8]陆雅海,张福锁. 根际微生物研究进展[J].土壤,2006,38(2):113‑121.
LU Y H,ZHANG F S.The advances in rhizosphere microbiology[J].Soils,2006,38(2):113‑121.
[9]DEGENS B P,SCHIPPER L A,SPARLING G P,et al.Decreases in organic C reserves in soils can reduce the catabolic diversity of soil microbial communities[J].Soil Biology and Biochemistry,2000,32(2):189‑196.
[10]MENDES R,KRUIJT M,BRUIJN I D,et al.Deciphering the rhizosphere microbiome for disease‑suppressive bacteria[J].Science,2011,332(6033):1097‑1100.
[11]ZAMIOUDIS C,PIETERSE C M J.Modulation of host immunity by beneficial microbes[J].Molecular Plant‑Microbe Interactions,2012,25(2):139‑150.
[12]NOGUCHI H,PARK J,TAKAGI T.MetaGene:Prokaryotic gene finding from environmental genome shotgun sequences[J].Nucleic Acids Research,2006,34(19):5623‑5630.
[13]FU L,NIU B,ZHU Z,et al.CD‑HIT:Accelerated for clustering the next‑generation sequecing data[J].Bioinformatics,2012,28(23):3150‑3152.
[14]LI R,LI Y,KRISTIANSEN K,et al.SOAP:Short oligonucleotide alignment program[J].Bioinformatics,2008,24(5):713‑714.
[15]BUCHFINK B,XIE C,HUSON D H.Fast and sensitive protein alignment using DIAMOND [J].Nature Methods,2015,12(1):59‑60.
[16]SI Z H,SONG X S,WANG Y H,et al.Intensified heterotrophic denitrification in constructed wetlands using four solid carbon sources denitrification efficiency and bacterial community structure[J].Bioresource Technology,2018,267:416‑425.
[17]石世杰,李纯杰,曹凑贵,等.稻虾共作模式下不同播期对水稻产量和品质的影响[J].华中农业大学学报,2020,39(2):25‑32.
SHI S J,LI C J,CAO C G,et al.Effects of different sowing date on yield and quality of high quality rice in rice‑crayfish ecosystem[J].Journal of Huazhong Agricultural University,2020,39(2):25‑32.
[18]廖咏梅,黄元腾吉,韩宁宁,等.稻鸭共育模式下水稻根际真菌和细菌种群多样性分析[J].南方农业学报,2019,50(1):59‑67.
LIAO Y M,HUANG Y T J,HAN N N,et al.Analysis of population diversity of fungi and bacteria in rice rhizosphere soil under rice‑duck farming model[J].Journal of Southern Agriculture,2019,50(1):59‑67.
[19]CHEN S,ZHOU Y,CHEN Y,et al.Fastp:An ultra‑fast all‑in‑one FASTQ preprocessor[J].Bioinformatics,2018,34(17):884‑890.
[20]LI D,LIU C M,LUO R,et al.MEGAHIT:An ultra‑fast single‑node solution for large and complex metagenomics assembly via succinct de Bruijn graph[J].Bioinformatics,2015,31(10):1674‑1676.
[21]BUCHFINK B,XIE C,HUSON D H.Fast and sensitive protein alignment using DIAMOND[J].Nature Methods,2015,12(1):59‑60.
[22]ZHANG J Y,LIU Y X,ZHANG N,et al.NRT1.1B contributes the association of root microbiota and nitrogen use in rice[J].Nature Biotechnology,2019,37:676‑684.
[23]SOROKIN D Y,VEJMELKOVA D,LÜCKER S,et al.Nitrolancea hollandica gen.nov,sp.nov,a chemolithoautotrophic nitrite‑oxidizing bacterium isolated from a bioreactor belonging to the phylum Chloroflexi[J].International Journal of Systematic and Evolutionary Microbiology,2014,64(6):1859‑1865.
WANG G H,LIU J J,YU Z H,et al.Research progress of acidobacteria ecology in soils[J].Biotechnology Bulletin,2016,32(2):14‑20.
[25]ZHAO Q,XIE F X,ZHANG F F,et al.Analysis of bacterial community functional diversity in late‑stage shrimp(Litopenaeus vannamei) ponds using Biolog EcoPlates and PICRUSt2[J].Aquaculture,2022,546:737288.
[26]FAN K K,DELGADO‑BAQUERIZO M,ZHU Y G,et al.Crop production correlate with soil multitrophic communities at the large spatial scale[J].Soil Biology and Biochemistry,2020,151:47‑51.
[27]YUAN Y,YU S L,YU J,et al.Predicting the function of 4‑coumarate:CoA ligase(LJ4CL1) in Lonicera japonica[J].International Journal of Molecular Sciences,2014,15:2386‑2399.
[28]孙董董,林春花,李博勋,等.3种炭疽菌P型ATP酶基因家族分析[J].热带作物学报,2015,36(4):737‑745.
SUN D D,LIN C H,LI B X,et al.The analysis of P‑type ATPases gene family in three colletotrichum species[J].Chinese Journal of Tropical Crops,2015,36(4):737‑745.
[29]陈晓楠,高丽华,周正富,等.耐辐射异常球菌黄嘌呤脱氢酶在氧化胁迫反应中的作用[J].中国农业科技导报,2021,23(3):73‑81.
CHEN X N,GAO L H,ZHOU Z F,et al.Role of xanthine dehydrogenase in oxidative stress response of Deinococcusradiodurans R1[J].Journal of Agricultural Science and Technology,2021,23(3):73‑81.
[30]SLAMTI L,PERCHAT S,HUILLET E,et al.Quorum sensing in Bacillus thuringiensis is required for completion of a full infectious cycle in the insect[J].Toxins,2014,6(8):2239‑2255.
[31]WANG M,WANG L F,SHI H D,et al.Soil bacteria,genes and metabolites stimulated during sulfur cycling and cadmium mobilization under sodium sulfate stress[J].Environmental Research,2021,10:1‑10.
[32]蔡元锋,吴宇澄,王书伟,等.典型淹水稻田土壤微生物群落的基因转录活性及其主要生理代谢过程[J].微生物学报,2014,54(9):1033‑1044.
CAI Y F,WU Y C,WANG S W,et al.Microbial metabolism in typical flooded paddy soils[J].Acta Microbiologica Sinica,2014,54(9):1033‑1044.
[33]SIMPSON P J,XIE H F,BOLAM D N,et al.The structural basis for the ligand specificity of family 2 carbohydrate‑binding modules[J].Journal of Biological Chemistry,2020,275(50):37‑42.
[34]PALCIC M M.Glycosyltransferases as biocatalysts[J].Current Opinion in Chemical Biology,2011,15:226‑233.