河南农业科学 ›› 2020, Vol. 49 ›› Issue (6): 8-15.DOI: 10.15933/j.cnki.1004-3268.2020.06.002

所属专题: 逆境(激素)响应转录组分析专题 逆境差异表达基因专题

• 作物栽培·遗传育种 • 上一篇    下一篇

小麦幼苗根系应答重金属Pb胁迫的转录组分析

王怡仁,聂梦杰,王玉泉,胡喜贵,丁位华,胡铁柱   

  1. (河南科技学院小麦中心/河南省杂交小麦重点实验室,河南 新乡 453003)
  • 收稿日期:2020-02-29 出版日期:2020-06-15 发布日期:2020-06-15
  • 通讯作者: 胡铁柱(1975-),男,河南民权人,教授,博士,主要从事小麦遗传育种研究。E-mail:tiezhuh@163.com
  • 作者简介:王怡仁(1994-),男,河南郑州人,在读硕士研究生,研究方向:小麦遗传育种。E-mail:1602776960@qq.com
  • 基金资助:
    河南省研究生教育改革与质量提升工程项目;河南省小麦产业体系岗位专家项目

Transcriptome Analysis of Wheat Roots in Response to Heavy Metal Pb Stress

WANG Yiren,NIE Mengjie,WANG Yuquan,HU Xigui,DING Weihua,HU Tiezhu   

  1. (Wheat Center,Henan Institute of Science and Technology/Henan Provincial Key Laboratory of Hybrid Wheat,Xinxiang 453003,China)
  • Received:2020-02-29 Published:2020-06-15 Online:2020-06-15

摘要: 为了探究小麦对重金属铅(Pb)胁迫应答的分子机制,采用水培法对小麦品种矮抗58进行不同质量浓度[0(对照)、40、80、160 mg/L]Pb胁迫处理,并对幼苗根系进行转录组测序,筛选分析差异表达基因,进行GO分类及KEGG富集分析。结果表明,不同质量浓度Pb处理下,小麦幼苗的根长和根数均受到抑制,且随着Pb质量浓度升高抑制作用增强。在Pb胁迫处理与CK间共获得了38 904个差异表达基因。其中,40、80、160 mg/L Pb条件下分别有6 072、16 581、16 251个差异表达基因。选取80 mg/L Pb处理的差异表达基因作为研究重点分别进行GO分类和KEGG通路富集分析。GO分类发现,上调差异表达基因主要富集在免疫系统过程、运动过程、代谢过程、节律性过程及催化活性和电子载体活性等方面,下调差异表达基因主要富集在发育过程、生长过程、定位过程、复制过程、生殖过程及转运活性和抗氧化活性等方面;KEGG富集分析发现,上调差异表达基因主要涉及植物激素信号转导途径、植物-病原互作途径、药物代谢途径、MAPK信号通路等方面,下调差异表达基因主要涉及次生代谢物的生物合成途径、苯丙烷类生物合成途径、抗生素生物合成途径、碳代谢和蔗糖代谢等方面。选取6个响应Pb胁迫的差异表达基因进行RT-PCR验证,结果表明6个差异表达基因的表达模式与RNA-Seq分析结果一致,进一步验证了RNA-Seq结果的准确性。

关键词: 小麦, 重金属, 铅胁迫, 转录组, 差异表达基因

Abstract: In order to explore the molecular mechanism of wheat in response to heavy metal Pb stress,the wheat cultivar AK58 was treated with different concentrations [0 (CK),40,80,160 mg/L] of Pb by hydroponic method, the root transcriptome was sequenced, then the differentially expressed genes were screened and analyzed, and GO classification and KEGG enrichment analysis were done.The results showed that under different concentrations of Pb,the root length and number of wheat were inhibited,and the inhibition effect was stronger with the increase of Pb concentration.A total of 38 904 differentially expressed genes were obtained between Pb stress treatment and CK.Among them,there were 6 072,16 581 and 16 251 differentially expressed genes under 40,80 and 160 mg/L Pb stresses,respectively.The differentially expressed genes of treatment with 80 mg/L Pb were selected as the research focus for GO classification and KEGG pathway enrichment analysis. GO classification showed that up-regulated differentially expressed genes were mainly involved in immune system processes,exercise processes,metabolic processes,rhythmic processes,catalytic activity and electron carrier activity;the down-regulated differentially expressed genes were mainly involved in development,growth,localization,replication,reproduction processes,transport activity and antioxidant enzyme activity.KEGG enrichment analysis found that up-regulated differentially expressed genes were mainly involved in plant hormone signal transduction pathway,plantpathogen interaction pathway,drug metabolism pathway and MAPK signaling pathway;the down-regulated differentially expressed genes were mainly involved in the secondary metabolite biosynthesis pathway,phenylpropane biosynthesis pathway,antibiotic biosynthesis pathway,carbon metabolism and sucrose metabolism.Six differentially expressed genes responding to Pb stress were selected for RT-PCR verification.The results showed that the expression patterns of the six differentially expressed genes were consistent with the results of RNA-Seq analysis,which further verified the accuracy of the RNA-Seq results.

Key words: Wheat, Heavy metal, Pb stress, Transcriptome, Differentially expressed genes

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